PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G237200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 326aa    MW: 36123.3 Da    PI: 5.5826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G237200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.34.7e-47101451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekew.yfFskrdkkyatgkrknratksgy 82 
                         lppGfrF Ptdeelv++yL++k+ + +++   +i++vd+yk+ePwdLp+      +  a  + +e+ yfF+kr+ +y++g r++r+t+ gy
  Brast03G237200.1.p  10 LPPGFRFFPTDEELVTFYLANKAMDASFTS-AAIRDVDLYKSEPWDLPStgkaamT--AgsGGDECyYFFCKRSIRYPSGARARRSTAGGY 97 
                         79*************************999.78**************954666542..2334445549*********************** PP

                 NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         Wk+tgkdk+v+++  +g+lvg+kktLvf++grap+gekt+Wvmhey l
  Brast03G237200.1.p  98 WKSTGKDKAVHCSreSGRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 145
                         ***********98777888***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-556170IPR003441NAC domain
PROSITE profilePS5100554.77710170IPR003441NAC domain
PfamPF023652.5E-2511144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGEWQMECL PPGFRFFPTD EELVTFYLAN KAMDASFTSA AIRDVDLYKS EPWDLPSTGK  60
AAMTAGSGGD ECYYFFCKRS IRYPSGARAR RSTAGGYWKS TGKDKAVHCS RESGRLVGTK  120
KTLVFHRGRA PRGEKTSWVM HEYMLLGQRC SNACSRADQG KWVICRVFMK KPPSDHRTLE  180
RDLEQGETLH GQTSPGHLLP MDGCDGEEAA PQAASQVLSD DPWDTNKRAM NSHENDGLVH  240
HVHPSLMMDR PSCASPFWPL YDDDQLGSFT SATDDLPELL EYGGYDIPKR GASPGNELAS  300
SSEAEISSIS VVPLHLDESY WNFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B7e-431017117166NAC domain-containing protein 19
4dul_A7e-431017117166NAC domain-containing protein 19
1ut7_B7e-431017117166NO APICAL MERISTEM PROTEIN
1ut7_A7e-431017117166NO APICAL MERISTEM PROTEIN
1ut4_B7e-431017117166NO APICAL MERISTEM PROTEIN
1ut4_A7e-431017117166NO APICAL MERISTEM PROTEIN
3swp_D8e-431017120169NAC domain-containing protein 19
3swp_C8e-431017120169NAC domain-containing protein 19
3swp_B8e-431017120169NAC domain-containing protein 19
3swp_A8e-431017120169NAC domain-containing protein 19
3swm_D8e-431017120169NAC domain-containing protein 19
3swm_C8e-431017120169NAC domain-containing protein 19
3swm_B8e-431017120169NAC domain-containing protein 19
3swm_A8e-431017120169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236707.20.0PREDICTED: NAC transcription factor 25
SwissprotQ9FLJ25e-56NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0Q3FGW20.0A0A0Q3FGW2_BRADI; Uncharacterized protein
STRINGBRADI3G36670.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.18e-59NAC domain containing protein 46